Тип публикации: статья из журнала
Год издания: 2018
Идентификатор DOI: 10.1016/j.resmic.2018.03.004
Ключевые слова: Ecosystem, Metagenomics, RNA, Ribosomal 16s, Model
Аннотация: Several measures of biodiversity are commonly used to describe microbial communities, analyzed using 16S gene sequencing. A wide range of available experiments on 16S gene sequencing allows us to present a framework for a comparison of various diversity indices. The criterion for the comparison is the statistical significance of the difference in index values for microbial communities with different traits, within the same experiment. The results of the evaluation indicate that Shannon diversity is the most effective measure among the commonly used diversity indices. The results also indicate that, within the present framework, the Gini coefficient as a diversity index is comparable to Shannon diversity, despite the fact that the Gini coefficient, as a diversity estimator, is far less popular in microbiology than several other measures. (C) 2018 Institut Pasteur. Published by Elsevier Masson SAS. All rights reserved.
Издание
Журнал: RESEARCH IN MICROBIOLOGY
Выпуск журнала: Vol. 169, Is. 4-5
Номера страниц: 254-261
ISSN журнала: 09232508
Место издания: AMSTERDAM
Издатель: ELSEVIER SCIENCE BV
Персоны
- Feranchuk Sergey (Russian Acad Sci, Limnol Inst, Siberian Branch, Irkutsk 664033, Russia; Natl Res Tech Univ, Dept Informat, Irkutsk 664074, Russia)
- Belkova Natalia (Russian Acad Sci, Limnol Inst, Siberian Branch, Irkutsk 664033, Russia; Sci Ctr Family Hlth & Human Reprod Problems, Irkutsk 664033, Russia)
- Potapova Ulyana (Russian Acad Sci, Limnol Inst, Siberian Branch, Irkutsk 664033, Russia)
- Kuzmin Dmitry (Siberian Fed Univ, Genome Res & Educ Ctr, Lab Forest Genom, Krasnoyarsk 660036, Russia; Siberian Fed Univ, Inst Space & Informat Technol, Dept High Performance Comp, Krasnoyarsk 660074, Russia)
- Belikov Sergei (Russian Acad Sci, Limnol Inst, Siberian Branch, Irkutsk 664033, Russia)
Вхождение в базы данных
Информация о публикациях загружается с сайта службы поддержки публикационной активности СФУ. Сообщите, если заметили неточности.