Тип публикации: доклад, тезисы доклада, статья из сборника материалов конференций
Конференция: International Work-Conference on Bioinformatics and Biomedical Engineering, IWBBIO 2018; Granada, Spain; Granada, Spain
Год издания: 2018
Идентификатор DOI: 10.1007/978-3-319-78723-7_16
Ключевые слова: K-means, Order, Probability, Projection, Symmetry, Triplet
Аннотация: Chloroplast genomes have eight-cluster structuredness, in triplet frequency space. Small fragments of a genome converted into a triplet frequency dictionaries are the elements to be clustered. Typical structure consists of eight clusters: six of them correspond to three different positions of a reading frame shifted for 0, 1 and 2 nucleotides (in two opposing strands), the seventh cluster corresponds to a junk regions of a genome, and the eighth cluster is comprised by the fragments with excessive GC-content bearing specific RNA genes. The structure exhibits a specific symmetry. © 2018, Springer International Publishing AG, part of Springer Nature.
Издание
Журнал: Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
Выпуск журнала: Vol. 10813 LNBI
Номера страниц: 186-196
ISSN журнала: 00213089
Персоны
- Sadovsky M. (Institute of Computational Modelling of SB RAS, Akademgorodok, Krasnoyarsk, Russian Federation, Institute of Fundamental Biology and Biotechnology, Siberian Federal University, Svobodny Prospect, 79, Krasnoyarsk, Russian Federation)
- Senashova M. (Institute of Computational Modelling of SB RAS, Akademgorodok, Krasnoyarsk, Russian Federation)
- Malyshev A. (Institute of Computational Modelling of SB RAS, Akademgorodok, Krasnoyarsk, Russian Federation)
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